LM22: LM22

In elmerfer/MIXTURE: MIXTURE: a nu-SVR based recursive feature extraction mdoel with noise constraints for molecular signature deconvolution of bulk tumor tissues

LM22

Description

A dataset containing the molecular signatureprofiles of 22 cell types. taken from [Newman et al.](http://www.nature.com/nmeth/journal/v12/n5/abs/nmeth.3337.html)

Usage

data(LM22)

Format

A data frame with 547 rows (genes) and 22 variables (cell types). The rownames contains the GeneSymbols and the colnames the cell types

Details

• B cells naive

• B cells memory

• Plasma cells

• T cells CD8

• T cells CD4 naive

• T cells CD4 memory resting

• T cells CD4 memory activated

• T cells follicular helper

• T cells regulatory (Tregs)

• T cells gamma delta

• NK cells resting

• NK cells activated

• Monocytes

• Macrophages M0

• Macrophages M1

• Macrophages M2

• Dendritic cells resting

• Dendritic cells activated

• Mast cells resting

• Mast cells activated

• Eosinophils

• Neutrophils

References

https://cibersort.stanford.edu/

elmerfer/MIXTURE documentation built on Aug. 20, 2024, 8:03 p.m.