clustHeatmap: clustHeatmap: Generate Heatmap of Cluster Coefficients

In elmerfer/MIXTURE: MIXTURE: a nu-SVR based recursive feature extraction mdoel with noise constraints for molecular signature deconvolution of bulk tumor tissues

clustHeatmap: Generate Heatmap of Cluster Coefficients

Description

This function generates a heatmap of cluster coefficients (absolute or normalized) from the output of 'scIdent'.

Usage

clustHeatmap(scIdentObj, coef = "abs")

Arguments

scIdentObj	The output object from the 'scIdent' function.
coef	A string indicating the type of coefficients to plot. Can be "abs" for absolute coefficients or "prop" for normalized coefficients. Default is "abs".

Details

'clustHeatmap' creates a heatmap using ggplot2, showing the coefficients for each cluster. The function can plot either absolute or normalized coefficients.

Value

A ggplot object representing the heatmap of cluster coefficients.

Examples

## Not run: 
clustHeatmap(scIdentObj, coef = "abs")

## End(Not run)

elmerfer/MIXTURE documentation built on Aug. 20, 2024, 8:03 p.m.