initRecountID: Intialise parameters and directories for a give recount ID.

In elqumsan/RNAseqMVA: Application of Multivariate Analysis methods to RNA-seq Data

Description

This function ensures the consistency of the parameters for a giveb RNA-seq experiment specified by its recount ID. (1) Merge the global parameters with experiment-specific parameters (description, short label, ...). (2) Check that some required parameters are well defined. (3) Check the output directory (if not specified in config, define them with default paths) and create them if required.

Usage

initRecountID(recountID, project.parameters)

Arguments

recountID	must be a valid ID row Recount2 database (SRP...)
project.parameters	project parameters (read from the YAML-formatted file)

Value

all project.parameters for the related recount IDn as specified in the YAML configuration file.

Author(s)

Jacques van Helden and Mustafa AbuElQumsan

elqumsan/RNAseqMVA documentation built on March 10, 2021, 8:10 a.m.