outputParameters: Compute output parameters for an RNAseqMVA analysis

In elqumsan/RNAseqMVA: Application of Multivariate Analysis methods to RNA-seq Data

Description

Compute output parameters (output directory, file prefix, figure label) for a given analysis given its input parameterrs (recountIR, dataset, classifier, permutation or not).

Usage

outputParameters(
  dataset,
  classifier,
  permute = FALSE,
  createDir = TRUE,
  knn.k = NULL
)

Arguments

dataset	an object of class DataTableWithTrainTestSets
classifier	is the type of classifier that is used with repeated process.
permute=FALSE	is show if the class lable are permuted this for sake of the knowing the strength and weaknesses of the classifier
createDir=TRUE	if TRUE, the result directory is created automatically if it does not exist

Value

a list with the following fields

• resultDir: path to the result directory, in which the result files should be stored.

• filePrefix: string that should prepend the name of each result file.

• figureLabel: short string with a label for the graphics

Author(s)

Mustafa AbuElQumsan and Jacques van Helden

elqumsan/RNAseqMVA documentation built on March 10, 2021, 8:10 a.m.