getRelatedness: Calculate relatedness
In elulu3/LymphoSeqTest: Analyze high-throughput sequencing of T and B cell receptors
View source: R/clonalRelatedness.R
getRelatedness R Documentation
Calculate relatedness
Description
Calculates the clonal relatedness of a repertoire_id.
Usage
getRelatedness(sample_table, editDistance = 10)
Arguments
sample_table
A tibble of unproductive or productive junction
sequences or productive junction sequences. junction and duplicate_count are
required columns.
editDistance
An integer giving the minimum edit distance that the
sequence must be less than or equal to. See details below.
elulu3/LymphoSeqTest documentation built on Aug. 27, 2022, 5:47 a.m.
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View source: R/clonalRelatedness.R
| getRelatedness | R Documentation |
Calculate relatedness
Description
Calculates the clonal relatedness of a repertoire_id.
Usage
getRelatedness(sample_table, editDistance = 10)
Arguments
sample_table |
A tibble of unproductive or productive junction sequences or productive junction sequences. junction and duplicate_count are required columns. |
editDistance |
An integer giving the minimum edit distance that the sequence must be less than or equal to. See details below. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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