searchDB: Search for T cell receptor beta CDR3 amino acid sequences...
In elulu3/LymphoSeqTest: Analyze high-throughput sequencing of T and B cell receptors
searchDB R Documentation
Search for T cell receptor beta CDR3 amino acid sequences with known antigen
specificity from iReceptor2
Description
Search for published T cell receptor beta CDR3 amino acid sequences with
known antigen specificity in a list of data frames.
Usage
searchDB(study_table, credential)
Arguments
study_table
A tibble generated by the LymphoSeq functions
searchPublished or topSeqs. "aminoAcid", "frequencyCount", and "count"
are required columns.
Value
Returns a tibble of with sample name and instance in the sample
that the published TCR sequence appeared along with additional
information including disease status, sample type, and PubMed ID
(PMID) for the reference where the sequence was characterized.
elulu3/LymphoSeqTest documentation built on Aug. 27, 2022, 5:47 a.m.
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| searchDB | R Documentation |
Search for T cell receptor beta CDR3 amino acid sequences with known antigen specificity from iReceptor2
Description
Search for published T cell receptor beta CDR3 amino acid sequences with known antigen specificity in a list of data frames.
Usage
searchDB(study_table, credential)
Arguments
study_table |
A tibble generated by the LymphoSeq functions searchPublished or topSeqs. "aminoAcid", "frequencyCount", and "count" are required columns. |
Value
Returns a tibble of with sample name and instance in the sample that the published TCR sequence appeared along with additional information including disease status, sample type, and PubMed ID (PMID) for the reference where the sequence was characterized.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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