Man pages for eprifti/momr
Mining Metaomics Data (MetaOMineR)
| abondanceScore | abondanceScore |
| aggregateProfiles | aggregateProfiles |
| buildMgsFinal | buildMgsFinal |
| computeFilteredVectors | computeFilteredVectors |
| computeSignalMetrics | computeSignalMetrics |
| computeUpsizedGC | computeUpsizedGC |
| connectivity | connectivity |
| countSampledGenes | countSampledGenes |
| countSampledGenesGC | countSampledGenesGC |
| deleteData | deleteData |
| downsizedRichnessL2T | downsizedRichnessL2T |
| downsizeGC | downsizeGC |
| downsizeGC.all | downsizeGC.all |
| downsizeMatrix | downsizeMatrix |
| extractProfiles | extractProfiles |
| extractSignificant | extractSignificant |
| filterListGenebags | filterListGenebags |
| filterMat | filterMat |
| filt.hierClust | filt.hierClust |
| hierClust | hierClust |
| hs_3.3_metahit_genesize | hs_3.3_metahit_genesize |
| hs_3.3_metahit_sample_dat_freq | hs_3.3_metahit_sample_dat_freq |
| hs_3.3_metahit_sample_dat_raw | hs_3.3_metahit_sample_dat_raw |
| indexReads | indexReads |
| indexReadsGC | indexReadsGC |
| launchTask | launchTask |
| lmp | lmp |
| main | main |
| mapResults | mapResults : merge data from // computing (the reduce... |
| matrix2Integer | matrix2Integer |
| mgs_hs_3.3_metahit_sup500 | mgs_hs_3.3_metahit_sup500 |
| normFreqRPKM | normFreqRPKM |
| normFreqTC | normFreqTC |
| phenoPairwiseRelations | phenoPairwiseRelations |
| plotBarcode | plotBarcode |
| plotBarcode2 | plotBarcode2 |
| plotBarcodeBW | plotBarcodeBW |
| plotCol | plotCol: a matrix of colored cells when debugging |
| plotCors | plotCors |
| plotCors2 | plotCors2 |
| plotMGSQuality | plotMGSQuality |
| plotPvals | plotPvals |
| presenceScore | presenceScore |
| profiles2Genebags | profiles2Genebags |
| projectOntoMGS | projectOntoMGS |
| rdn | rdn |
| sampleRandomly | sampleRandomly |
| selectListSize | selectListSize |
| splitData | splitData |
| testRelations | testRelations |
| watchProgress | watchProgress |
