normFreqTC: normFreqTC
In eprifti/momr: Mining Metaomics Data (MetaOMineR)
normFreqTC R Documentation
normFreqTC
Description
converts a raw count matrix onto a frequency matrix using the TC (total count) normalization method.
This method consists of scaling the signal by the total counts per each sample
Usage
normFreqTC(dat, HQ_reads = NULL)
Arguments
dat
: raw counts data matrix with gene_ids as rownames
HQ_reads
: To take into account a vector of high quality reads that are not mapped.
Details
normFreqTC
Value
a normalized frequency matrix
Author(s)
Edi Prifti
eprifti/momr documentation built on Dec. 11, 2024, 3:06 p.m.
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| normFreqTC | R Documentation |
normFreqTC
Description
converts a raw count matrix onto a frequency matrix using the TC (total count) normalization method. This method consists of scaling the signal by the total counts per each sample
Usage
normFreqTC(dat, HQ_reads = NULL)
Arguments
dat |
: raw counts data matrix with gene_ids as rownames |
HQ_reads |
: To take into account a vector of high quality reads that are not mapped. |
Details
normFreqTC
Value
a normalized frequency matrix
Author(s)
Edi Prifti
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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