normFreqTC: normFreqTC

Description Usage Arguments Details Value Author(s)

Description

converts a raw count matrix onto a frequency matrix using the TC (total count) normalization method. This method consists of scaling the signal by the total counts per each sample

Usage

1
normFreqTC(dat, HQ_reads = NULL)

Arguments

dat

: raw counts data matrix with gene_ids as rownames

HQ_reads

: To take into account a vector of high quality reads that are not mapped.

Details

normFreqTC

Value

a normalized frequency matrix

Author(s)

Edi Prifti


eprifti/momr documentation built on May 16, 2019, 8:20 a.m.