computeFilteredVectors: computeFilteredVectors

In eprifti/momr: Mining Metaomics Data (MetaOMineR)

computeFilteredVectors

Description

filters and computes verctors based on gene profiles from a single matrix or a list of matrix profiles

Usage

computeFilteredVectors(profile, type = "mean", filt = 0, debug = FALSE)

Arguments

profile	: list of (or unique) matrix profiles
type	: vectorisation method, vectors are calculated from the mean, median or sum of a given list of genes; default type="mean" otherwise it will be "median" or "sum"
filt	: filtering threshold in and sparse values put to 0 default filt= 0, no filtering
debug	: default is FALSE, when TRUE information on advancement is printed

Details

computeFilteredVectors

Value

a filtered vector or a matrix of filtered vectors

Author(s)

Edi Prifti & Emmanuelle Le Chatelier

eprifti/momr documentation built on Sept. 27, 2022, 3:36 a.m.