connectivity: connectivity

In eprifti/momr: Mining Metaomics Data (MetaOMineR)

connectivity

Description

This function computes the intra-row correlation and applied a threshold to compute the connections of each row. A connectivity vector is returned.

Usage

connectivity(prof, method = "pearson", th = 0, soft = FALSE)

Arguments

prof	: a profile matrix. This data is used to compute correlations.
method	: the correlation method, default = pearson.
th	: default 0, if >0 than this threshold will be applied to compute a hard threholded connectivity.
soft	: default = FALSE, if TRUE and when th > 0, the connectivity is computed as the soft threholded, sum of correlations above the threshold

Details

connectivity

Value

a vector of connectivity

Note

this connectivity does not use a hard thresholding but is based on a total correlation score

Author(s)

Emmanuelle le Chatelier & Edi Prifti

eprifti/momr documentation built on Dec. 11, 2024, 3:06 p.m.