extractProfiles: extractProfiles

In eprifti/momr: Mining Metaomics Data (MetaOMineR)

extractProfiles

Description

This function extracts the profiles from a gene profile matrix of a group of genes or a list of groups of genes. It can also restrict the size of the result

Usage

extractProfiles(genebag, data, size.max = 15000, size.min = 1, silent = TRUE)

Arguments

genebag	: vector or list of gene_ids
data	: raw count or frequency matrix with genes_ids as rawnames
size.max	: default 15000, maximum number of profiles to be extracted
size.min	: default 1, the minimal size threshold above which a group of genes is selected. This is used to extract multiple profiles and filtering the list with a minimal number of genes
silent	: default TRUE, detailling and following computation progress

Details

extractProfiles

Value

a matrix or a list of profile matrixes

Author(s)

Edi Prifti & Emmanuelle Le Chatelier

eprifti/momr documentation built on Sept. 27, 2022, 3:36 a.m.