kHeat-methods: kHeat

Description Usage Arguments

Description

K-mean clustering and heatmap

Usage

1
2
3
4
5
6
kHeat(obj, pdffout, k = NULL, log2.it = TRUE, scale.it = TRUE,
  small = 0.05)

## S4 method for signature 'tpm'
kHeat(obj, pdffout, k = NULL, log2.it = TRUE,
  scale.it = TRUE, small = 0.05)

Arguments

obj

A tpm object.

pdffout

A character string specify pdf output file.

k

A numeric value specifying the number of clusters.

log2.it

A logical value specifying whether to log2 transform the tpm value data.

scale.it

A logical value specifying whether to row standardize the tpm value data.

small

A numeric value indicating the adjustment to the TPM values before log2 transformation.


ericaenjoy3/RNA documentation built on May 28, 2019, 8:37 p.m.