bplot-methods: bplot

In ericaenjoy3/RNA: RNA data analysis

Description

Boxplot of tpm.value slot of tpm object.

Usage

bplot(obj, title, pdffout, probs = 0.8, ylab = expression(paste(log[2],
  "(TPM)")), isLog = FALSE, small = 0.05)

## S4 method for signature 'tpm'
bplot(obj, title, pdffout, probs = 0.8,
  ylab = expression(paste(log[2], "(TPM)")), isLog = FALSE, small = 0.05)

Arguments

obj	A tpm object.
title	A title for boxplot.
pdffout	A character string specify pdf output file.
probs	A probability specifying the top quantile to use a ceilling in plotting.
ylab	A string specifying the ylab in the plot.
isLog	A logical value indicating whether TPM values are already log2 transformed.
small	A numeric vector indicating the adjustment to the TPM values before log2 transformation.

ericaenjoy3/RNA documentation built on May 28, 2019, 8:37 p.m.