lineGraph-methods: lineGraph

In ericaenjoy3/RNA: RNA data analysis

Description

Line graphs of clustering

Usage

lineGraph(obj, col.idx, row.idx, clusters, pdffout, log.it.already = FALSE,
  mean.it = FALSE, small = 0.05)

## S4 method for signature 'tpm'
lineGraph(obj, col.idx, row.idx, clusters, pdffout,
  log.it.already = FALSE, mean.it = FALSE, small = 0.05)

Arguments

obj	A tpm object.
col.idx	A numeric or logical vector specifying columns to keep.
row.idx	A numeric or logical vector specifying rows to keep.
clusters	A numeric vector indicating cluster membership.
pdffout	A character string specify pdf output file.
log.it.already	A logical value specifying whether tpm values were already log2 transformed.
mean.it	A logical value indicating whether to generate group values from individual samples.
small	A numeric value indicating the adjustment to the TPM values before log2 transformation.

ericaenjoy3/RNA documentation built on May 28, 2019, 8:37 p.m.