Man pages for erictleung/dada2HPCPipe
DADA2 HPC Workflow Wrapper
| dada2HPCPipe-package | dada2HPCPipe: DADA2 HPC Workflow Wrapper |
| do_error_learn | Learn Error Rates for Sequences |
| do_input_step | Read in Data Step |
| do_quality_step | Plot Quality Profile Step |
| do_sample_infer_step | Dereplicated Data and Infer Sample Sequence Variants |
| do_taxonomy_step | Construct Sequence Table, Remove Chimeras, and Assign... |
| do_track_dada2 | Construct Sequence Table, Remove Chimeras, and Assign... |
| extract_sample_id | Extract Sample IDs |
| filter_and_trim | Filter and Trim Sample Sequences |
| filter_by_id | Filter Samples by ID |
| filter_samples | Filter Filtered Samples by Mapping File |
| getN | Get Number of Unique Sequences |
| read_in_data | Read in Sequence Data |
