Description Usage Arguments Value References Examples
Construct Sequence Table, Remove Chimeras, and Assign Taxonomy
1 | do_track_dada2(out, dadaFs, mergers, seqtab, seqtab_nochim, sample_names)
|
out |
matrix output from 'filterAndTrim()' function |
dadaFs |
dada object output from 'dada()' function for forward reads |
mergers |
output from 'mergePairs()' function |
seqtab |
sequence table output from 'makeSequenceTable()' |
seqtab_nochim |
output from 'removeBimeraDenovo()' |
sample_names |
vector of sample names |
matrix of sample rows and metric columns over the previous pipeline steps
See "Track Reads Through the Pipeline" http://benjjneb.github.io/dada2/tutorial.html#track-reads-through-the-pipeline
1 2 | do_track_dada2(out, dadaFs, getN, mergers, seqtab, seqtab_nochim,
sample_names)
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