do_input_step: Read in Data Step
In erictleung/dada2HPCPipe: DADA2 HPC Workflow Wrapper
Description
Usage
Arguments
Value
Examples
Description
Takes in strings for paths and returns a list to further manipulate in
downstream steps.
Usage
1
do_input_step(map_file, data_path)
Arguments
map_file
string with path to mapping file
data_path
string with directory of samples
Value
Returns list with four elements:
mapthe mapping file
seq_fforward sequencing sample paths
seq_rreverse sequencing sample paths
seq_namessamples names for sequence samples
Examples
1
2
3
example_map <- "mapping.txt"
example_data <- "sequences"
input_files <- do_input_step(example_map, example_data)
erictleung/dada2HPCPipe documentation built on May 10, 2019, 1:19 p.m.
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Description Usage Arguments Value Examples
Description
Takes in strings for paths and returns a list to further manipulate in downstream steps.
Usage
1 | do_input_step(map_file, data_path)
|
Arguments
map_file |
string with path to mapping file |
data_path |
string with directory of samples |
Value
Returns list with four elements:
mapthe mapping file
seq_fforward sequencing sample paths
seq_rreverse sequencing sample paths
seq_namessamples names for sequence samples
Examples
1 2 3 | example_map <- "mapping.txt"
example_data <- "sequences"
input_files <- do_input_step(example_map, example_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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