do_quality_step: Plot Quality Profile Step
In erictleung/dada2HPCPipe: DADA2 HPC Workflow Wrapper
Description
Usage
Arguments
Examples
Description
Plot Quality Profile Step
Usage
1
do_quality_step(for_seqs, rev_seqs, plot_dir = "results", w = 7, h = 5)
Arguments
for_seqs
character vector of paths for the forward sequencing samples
rev_seqs
character vector of paths for the reverse sequencing samples
plot_dir
string for directory name to output plots to
w
width of the output figure
h
height of the output figure
Examples
1
2
3
sample_f <- c("s001_R001.fastq", "s002_R001.fastq")
sample_r <- c("s001_R002.fastq", "s002_R002.fastq")
do_quality_step(sample_f, sample_r)
erictleung/dada2HPCPipe documentation built on May 10, 2019, 1:19 p.m.
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Description Usage Arguments Examples
Description
Plot Quality Profile Step
Usage
1 | do_quality_step(for_seqs, rev_seqs, plot_dir = "results", w = 7, h = 5)
|
Arguments
for_seqs |
character vector of paths for the forward sequencing samples |
rev_seqs |
character vector of paths for the reverse sequencing samples |
plot_dir |
string for directory name to output plots to |
w |
width of the output figure |
h |
height of the output figure |
Examples
1 2 3 | sample_f <- c("s001_R001.fastq", "s002_R001.fastq")
sample_r <- c("s001_R002.fastq", "s002_R002.fastq")
do_quality_step(sample_f, sample_r)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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