View source: R/explore-missingness.R
Order a genotype matrix by locus missingness at different numbers of individuals and plot results
1 2 3 4 5 6 | miss_curves_locus(
x012,
reorder = TRUE,
locus_thin_to = 5000,
indv_nums = integer(0)
)
|
x012 |
a matrix of 012 genotypes with missing data coded as -1 |
reorder |
Logical. if TRUE then the order of loci is re-done for every number of loci |
locus_thin_to |
For speed with plotting it is possible to retain just fraction of the loci, once the cumulatives have been counted. Default is 1000 of them. |
indv_nums |
The number of individuals to explore retaining. By default it just does them in 10 roughly equal chunks. |
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