miss_curves_locus: Order a genotype matrix by locus missingness at different...

Description Usage Arguments

View source: R/explore-missingness.R

Description

Order a genotype matrix by locus missingness at different numbers of individuals and plot results

Usage

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miss_curves_locus(
  x012,
  reorder = TRUE,
  locus_thin_to = 5000,
  indv_nums = integer(0)
)

Arguments

x012

a matrix of 012 genotypes with missing data coded as -1

reorder

Logical. if TRUE then the order of loci is re-done for every number of loci

locus_thin_to

For speed with plotting it is possible to retain just fraction of the loci, once the cumulatives have been counted. Default is 1000 of them.

indv_nums

The number of individuals to explore retaining. By default it just does them in 10 roughly equal chunks.


eriqande/genoscapeRtools documentation built on Dec. 27, 2021, 8:01 a.m.