sample_from_angsd_probs: Sample a genotype (0,1,2) from probabilities for all the snps...
In eriqande/genoscapeRtools: Tools for building migratory bird genoscapes
Description
Sample a genotype (0,1,2) from probabilities for all the snps and individuals
in x.
Usage
1
sample_from_angsd_probs(x, samples, snps, thresh)
Arguments
x
a numeric vector that holds the posterior probs from an
ANGSD geno.gz file (from doGenos 32)
samples
character vector of sample names
snps
character vector of SNP names
thresh
any snp in an individual must have one posterior greater than T in order to
have a non-missing value simulated for it. For example, if T is 0.6 and the posteriors
are 0.33, 0.33, 0.33, this locus will just get a missing (-1).
eriqande/genoscapeRtools documentation built on Dec. 27, 2021, 8:01 a.m.
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Description
Sample a genotype (0,1,2) from probabilities for all the snps and individuals in x.
Usage
1 | sample_from_angsd_probs(x, samples, snps, thresh)
|
Arguments
x |
a numeric vector that holds the posterior probs from an ANGSD geno.gz file (from doGenos 32) |
samples |
character vector of sample names |
snps |
character vector of SNP names |
thresh |
any snp in an individual must have one posterior greater than T in order to have a non-missing value simulated for it. For example, if T is 0.6 and the posteriors are 0.33, 0.33, 0.33, this locus will just get a missing (-1). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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