Files in eriqande/genoscapeRtools
Tools for building migratory bird genoscapes
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/apwnd_windows.R
R/explore-missingness.R
R/geno_freq_calcs.R
R/genoscapeRtools-package.R
R/genoscape_pca.R
R/grt_positions.R
R/hohz_windows.R
R/hwe_exact_test.R
R/import.R
R/pairwise_fst.R
R/plink-admixture-etc.R
R/qprob_rando_raster.R
R/read_012.R
R/read_angsd_geno_probs.R
R/scan_012.R
R/small_utils.R
R/snp-selection.R
README.Rmd
README.md
data/wifl_stack.rda
development/Rmd/choosing-assays.Rmd
development/Rmd/plotting-alle-freqs.Rmd
development/Rmd/selecting-loci-from-alle-freqs-etc.Rmd
development/data/WIFL_Cat_forAssayDesign.txt
development/data/WIFL_Groups_forAlleleFreqCalc.txt
genoscapeRtools.Rproj
man/apwnd_window_internal.Rd
man/apwnd_windows.Rd
man/comp_pair.Rd
man/compile_assayable.Rd
man/convert_012_to_bed.Rd
man/correct_ass_prob.Rd
man/geno_freq_calc_single.Rd
man/geno_freq_calcs.Rd
man/genoscapeRtools.Rd
man/genoscape_pca.Rd
man/ggplot_the_Qs.Rd
man/group_012_cnts.Rd
man/hohz_windows_1.Rd
man/hwe_exact_test.Rd
man/mat_cumul_cpp.Rd
man/miss_curves_indv.Rd
man/miss_curves_locus.Rd
man/pairwise_fst.Rd
man/pipe.Rd
man/qprob_rando_raster.Rd
man/read_012.Rd
man/read_angsd_geno_probs.Rd
man/run_admixture.Rd
man/sample_from_angsd_probs.Rd
man/scan_012.Rd
man/slurp_admixture.Rd
man/testHWE.Rd
readme-figs/clean-pic-1.png
readme-figs/count-missing-1.png
readme-figs/indivs-1.png
readme-figs/loci-1.png
readme-figs/snprelate-1.png
readme-figs/snprelate-from-012-1.png
src/RcppExports.cpp
src/apwnd_window_internal.cpp
src/sample_from_angsd_probs.cpp
src/small_utils.cpp
tutorials/.gitignore
tutorials/inputs/sort_order_admixture.txt
tutorials/inputs/wifl_snp_comparison_counts.txt
tutorials/running_admixture.Rmd
tutorials/running_admixture.md
tutorials/selecting-wifl-assays.Rmd
tutorials/selecting-wifl-assays.nb.html
