get_reference: Returns reference file VALIDATED
In ethanmoyer/MethylConstruct:
Description
Usage
Arguments
Value
Examples
View source: R/preprocessData.R
Description
This function returns a reference file given location. Any preprocessing
steps for the reference will also be added in this function.
Usage
1
get_reference(reference_file)
Arguments
reference_file
directory location of where given IDAT file is located
Value
beta matrix without probes located on sex chromosomes.
Examples
1
2
3
reference <- get_reference('~/references/hg38/annotation/R/
EPIC.hg38.manifest.rds')
... some visualization
ethanmoyer/MethylConstruct documentation built on July 10, 2020, 12:28 a.m.
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Description Usage Arguments Value Examples
View source: R/preprocessData.R
Description
This function returns a reference file given location. Any preprocessing steps for the reference will also be added in this function.
Usage
1 | get_reference(reference_file)
|
Arguments
reference_file |
directory location of where given IDAT file is located |
Value
beta matrix without probes located on sex chromosomes.
Examples
1 2 3 | reference <- get_reference('~/references/hg38/annotation/R/
EPIC.hg38.manifest.rds')
... some visualization
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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