track_gene: Proportion of probes methylated, unmethylated, ambiguous at...
In ethanmoyer/MethylConstruct:

Description Usage Arguments Value Examples

This function returns the proportion of each probes that are methylated, unmethylated, ambiguous at each node across a tree.

1	track_gene(tree, probe_node_matrix, reference, gene)

`tree`	ape::phylo tree
`probe_node_matrix`	matrix storing the methylation status across all probes and nodes on a tree
`reference`	reference file
`gene`	gene name

a structure composed of two lists that contain methylation state proportions for internal nodes and methylation state proportions for leaves

gene_information <- track_gene(tree, probe_node_matrix, reference, 'CD81')
thermo_prop_internal_nodes = gene_information$thermo_prop_internal_nodes
thermo_prop_leaves = gene_information$thermo_prop_leaves
... some visualization