betas_to_consensus_vector: Converts betas matrix to consensus vectors of probes for each...

In ethanmoyer/MethylConstruct:

Description

This function creates a consensus vector for each group using the betas matrix

Usage

betas_to_consensus_vector(
  reference_file,
  series_matrix_file,
  betas,
  group_names,
  remove_names
)

Arguments

reference_file	directory location of where given IDAT file is located
series_matrix_file	directory location of where given series matrix file is located
betas	matrix (rows are cell names, columns are probe names)
group_names	list of cell names in betas
remove_names	list of cell names in betas

Value

consensus vector data frame for each cell in group names

Examples

consensus_vector <- betas_to_consensus_vector('~/references/
EPIC.hg38.manifest.rds', 'GSE110554/samples_GEOLoadSeriesMatrix.rds', 
betas, c('NK', "Monocytes", ...), c('A.mix', 'B.mix', ...))
... some visualization 

ethanmoyer/MethylConstruct documentation built on July 10, 2020, 12:28 a.m.