read_lightcycler_1colour_cq: Reads quantification cycle (cq) data in 1 colour from Roche...

In ewallace/tidyqpcr: Quantitative PCR Analysis with the Tidyverse

Reads quantification cycle (cq) data in 1 colour from Roche Lightcyclers

Description

This is the data from "export in text format" from the analysis tab in the Lightcycler software. That software calls cq, "Cp".

Usage

read_lightcycler_1colour_cq(
  filename,
  skip = 2,
  col_names = c("include", "color", "well", "sample_info", "cq", "concentration",
    "standard", "status"),
  col_types = "liccddil",
  ...
)

Arguments

filename	file name
skip	number of lines to skip, defaults to 2
col_names	names to give to columns
col_types	data types of columns
...	other arguments to pass to read_tsv, if needed

Details

This function is a thin wrapper around readr::read_tsv.

Value

tibble containing cq data

See Also

read_lightcycler_1colour_raw

Examples

read_lightcycler_1colour_cq(system.file("extdata/Edward_qPCR_Nrd1_calibration_2019-02-02_Cq.txt.gz", 
                                                 package = "tidyqpcr"))

ewallace/tidyqpcr documentation built on June 5, 2024, 10:04 a.m.