CCC: The CCC Algorithm

In ewouddt/CCCBiclust: R Wrapper for Java Implementation of CCC and e-CC biclustering algorithm

Description

A R-wrapper which directly calls the original Java code for the CCC algorithm (http://kdbio.inesc-id.pt/software/ccc-biclustering/) and transforms it to the output format of the Biclust R package.

Usage

CCC(matrix, overlap = 0.1)

Arguments

matrix	The input matrix in which the columns are ordered by time.
overlap	Numeric in ]0,1[ containing the maximum percentage of overlapping allowed. The info slot will contain a logical vector which can filter the biclusters which overlap more than overlap*100 percent.

Details

PLACEHOLDER

Value

A Biclust S4 Class object containing extra information of the CCC algorithm result in the info slot.

Author(s)

Ewoud De Troyer

References

Sara C. Madeira, Miguel C. Teixeira, Isabel Sa Correia and Arlindo L. Oliveira, "Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithms", IEEE/ACM Transactions on Computational Biology and Bioinformatics

Examples

## Not run: 
data(heatdata)
out <- CCC(heatdata)
CCCinfo(out,method="bonferroni")

## End(Not run)

ewouddt/CCCBiclust documentation built on May 16, 2019, 9:41 a.m.