CCCBiclust: Identification of Regulatory Modules in Time Series Gene...

In ewouddt/CCCBiclust: R Wrapper for Java Implementation of CCC and e-CC biclustering algorithm

Description

CCCBiclust is an R wrapper for the available Java code for the CCC and e-CCC algorithm available at http://kdbio.inesc-id.pt/software/ccc-biclustering/ and http://kdbio.inesc-id.pt/software/e-ccc-biclustering/

References

Sara C. Madeira, Miguel C. Teixeira, Isabel Sa Correia and Arlindo L. Oliveira, "Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithms", IEEE/ACM Transactions on Computational Biology and Bioinformatics

Sara C. Madeira and Arlindo L. Oliveira, "A polynomial time biclustering algorithm for finding genes with approximate expression patterns in gene expression time series", Algorithms for Molecular Biology 2009, 4:8 (4 June 2009).

ewouddt/CCCBiclust documentation built on May 16, 2019, 9:41 a.m.