eCCCinfo: Filter eCCCinfo in info slot of eCCC Result

In ewouddt/CCCBiclust: R Wrapper for Java Implementation of CCC and e-CC biclustering algorithm

Description

Reorders eCCCinfo slot based on the p-values order and applies one of the 2 available filters.

Usage

eCCCinfo(resbic, filter = "none")

Arguments

resbic	Result from eCCC.
filter	Choose one of the following filters: "none", "Bonf0.01","Bonf0.01_overlap". Respectively no biclusters are filtered, significant biclusters with under 1 percent after Bonferroni correction are filtered and biclusters after Bonferroni (1 percent) with taking the maximum overlap into account are filtered.

Value

Returns a filtered and ordered eCCCinfo (info slot of eCCC result)

Author(s)

Ewoud De Troyer

Examples

## Not run: 
data(heatdata)
out <- eCCC_ext(heatdata,minr=3,minc=2)
eCCCinfo(out,filter="Bonf0.01_overlap")

## End(Not run)

ewouddt/CCCBiclust documentation built on May 16, 2019, 9:41 a.m.