CCC_disc: Discretization used for CCC algorithm.

In ewouddt/CCCBiclust: R Wrapper for Java Implementation of CCC and e-CC biclustering algorithm

Description

Discretization procedure proposed by Ji and Tan (see References). A M x N input matrix results in a M x (N-1) discretized matrix.

Usage

CCC_disc(matrix, threshold = 1)

Arguments

matrix	Gene Expression Matrix
threshold	Threshold for second step in discretization procedure.

Value

Returns a discretized matrix (see Description)

Author(s)

Ewoud De Troyer

References

L. Ji and K. Tan. Mining gene expression data for positive and negative co-regulated gene clusters. Bioinformatics, 20(16):2711-2718, 2004.

L. Ji and K. Tan. Identifying time-lagged gene clusters using gene expression data. Bioinformatics, 21(4):509-516, 2005.

ewouddt/CCCBiclust documentation built on May 16, 2019, 9:41 a.m.