CCCinfo: Filter CCCinfo in info slot of CCC Result

In ewouddt/CCCBiclust: R Wrapper for Java Implementation of CCC and e-CC biclustering algorithm

Description

Compute adjusted p-values and order biclusters based on them.

Usage

CCCinfo(resbic, method = "none", alpha = 0.01, filter_overlap = FALSE)

Arguments

resbic	Result from CCC.
method	Adjust p-values for multiplicity. Can be one of the following: c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none").
alpha	Significance level.
filter_overlap	Filter Bicluster results based on overlap set in CCC algorithm.

Value

Returns a filtered and ordered CCCinfo (info slot of CCC result)

Author(s)

Ewoud De Troyer

Examples

## Not run: 
data(heatdata)
out <- CCC(heatdata)
CCCinfo(out,method="bonferroni")

## End(Not run)

ewouddt/CCCBiclust documentation built on May 16, 2019, 9:41 a.m.