Man pages for exaexa/DiffSOM
Comparative analysis using EmbedSOM
| CellFile | Get the number of input file for each cell |
| Embed | Embed the analysis object |
| ExportData | Export a data frame with stuff from the DiffSOM object |
| ExportMap | Export the FlowSOM map object from the analysis |
| Gate | Apply gating and output a new diff-som object (to be... |
| GetProbs | Get a matrix with relative population abundances in clusters... |
| Load | Load stuff into analysis object |
| NiceMfrow | Guess a good square-ish mfrow for multiplots |
| NicePrettyColnames | Guess good marker names (ie. just take the first... |
| Plot | Plot aggregate sample information |
| PlotAnnotated | Plot annotated version of the plot with clusters |
| PlotClusters | Plot separated clusters |
| PlotDiff | Plot aligned sample density plots. Params are forwarded to... |
| PlotExprs | Plot marker expressions for histogram-style comparison of... |
| PlotScatter | Plot a scatter plot in markers 'x' and (optionally) 'y'. |
| PlotSignificance | Produce the plot with change significances |
| SignificanceColors | Produce a list of colors for plotting significance with each... |
