PlotAnnotated: Plot annotated version of the plot with clusters

In exaexa/DiffSOM: Comparative analysis using EmbedSOM

Description

This plots out aggregate density, all marker expression levels, and clustering with cluster numbers.

Usage

PlotAnnotated(ds, clusterMap = c(1:ds$nclust),
  annotation = c(1:nMapClust), pos = NULL, size.point = 1,
  size.text = 1, col.text = "black",
  cluster.colors = EmbedSOM::ClusterPalette, ...)

Arguments

clusterMap	mapping of metaclusters to a new clustering used to join some of them
annotation	vector of strings with annotation
pos	position of the annotation

Examples

PlotAnnotated(ds)

exaexa/DiffSOM documentation built on Aug. 22, 2019, 2:46 p.m.