Plot: Plot aggregate sample information

In exaexa/DiffSOM: Comparative analysis using EmbedSOM

Description

This plots out aggregate density, all marker expression levels, and clustering with cluster numbers. Extra params are forwarded to PlotEmbed.

Usage

Plot(ds, colNames = NULL, alpha = 0.5, mar = c(0, 0, 0, 0),
  density = T, clusters = T, cols = ds$colsUsed,
  mfrow = NiceMfrow(length(cols) + density + clusters), ...)

Arguments

colNames

column names to be used for plotting

Examples

Plot(ds)

exaexa/DiffSOM documentation built on Aug. 22, 2019, 2:46 p.m.