PlotExprs: Plot marker expressions for histogram-style comparison of...

In exaexa/DiffSOM: Comparative analysis using EmbedSOM

Description

Plot marker expressions for histogram-style comparison of multiple samples/clusters.

Usage

PlotExprs(ds, cols = ds$colsUsed, names = NicePrettyColnames(ds$fs, sel
  = cols), files = F, clusters = F, ref = NULL, alpha = 0.1,
  rdist = function(n) {     0.1 * rnorm(n) }, ...)

Arguments

cols	Which columns to plot
names	Which names to use for the columns
files	T/F – plot separate histograms for files
clusters	T/F – plot separate histograms for clusters
ref	Reference-distribution DiffSOM object
rdist	Scatter distribution generator
pch, cex, alpha	Used for plotting as usual

Examples

PlotExprs(ds2, ref=ds, clusters=T)

exaexa/DiffSOM documentation built on Aug. 22, 2019, 2:46 p.m.