SignificanceColors: Produce a list of colors for plotting significance with each...

In exaexa/DiffSOM: Comparative analysis using EmbedSOM

Description

Produce a list of colors for plotting significance with each cell.

Usage

SignificanceColors(ds, control, experiment, meta = T, paired = F,
  pow = 10, alpha = 0.5, probs = GetProbs(ds, meta),
  col.inconclusive = rgb(0.75, 0.75, 0.75, alpha/2),
  col.greater = rgb(1, 0.5, 0, alpha), col.less = rgb(0, 0.5, 1,
  alpha))

Arguments

control	Numbers of files with the base-line samples
experiment	Numbers of files that are expected to differ
meta	Use metacluster. Set to F for lower granularity
pow	Adjustment to p-vals before plotting. Use a lower value for seeing even insignificant stuff.
alpha	default alpha
col.inconclusive	color for inconclusive outcome
col.greater	the other color
col.less	color for the 'less' test significance

exaexa/DiffSOM documentation built on Aug. 22, 2019, 2:46 p.m.