Produce a list of colors for plotting significance with each cell.
1 2 3 4 5 | SignificanceColors(ds, control, experiment, meta = T, paired = F,
pow = 10, alpha = 0.5, probs = GetProbs(ds, meta),
col.inconclusive = rgb(0.75, 0.75, 0.75, alpha/2),
col.greater = rgb(1, 0.5, 0, alpha), col.less = rgb(0, 0.5, 1,
alpha))
|
control |
Numbers of files with the base-line samples |
experiment |
Numbers of files that are expected to differ |
meta |
Use metacluster. Set to F for lower granularity |
pow |
Adjustment to p-vals before plotting. Use a lower value for seeing even insignificant stuff. |
alpha |
default alpha |
col.inconclusive |
color for inconclusive outcome |
col.greater |
the other color |
col.less |
color for the 'less' test significance |
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