Files in facilebio/FacileAnalysis

Modularized and interactive analyses over a FacileDataStore

LICENSE.md R/api.R R/biocbox.R R/facile_api_extras.R R/fdge-base.R R/fdge-compare.R R/fdge-helpers.R R/fdge-interact.R R/feature-rankings.R R/ffsea-base.R R/ffsea-interact.R R/ffsea-meta.R R/flm_def-base.R R/fpca-base.R R/fpca-compare.R R/fpca-interact.R R/logging.R R/messages-warnings-errors.R R/package.R R/serialization.R R/sparrow-extensions.R R/test-helpers.R R/unfds.R R/utils.R README.Rmd README.md inst/scripts/edgeRQLF-workflow.R man/FacileAnalysisResultViz.Rd man/biocbox.Rd man/comparable.Rd man/compare.Rd man/contrast.Rd man/design.Rd man/faro.Rd man/fdge-helpers.Rd man/fdge.Rd man/fdge_methods.Rd man/ffsea.Rd man/ffsea_methods.Rd man/flm_def.Rd man/fpca.Rd man/messages-warnings-errors.Rd man/model.Rd man/param.Rd man/ranks_and_signatures.Rd man/redo.Rd man/reexports.Rd man/refds.Rd man/serialize.Rd man/signature.Rd man/signed.Rd man/status.Rd man/unfds.Rd man/with_sample_covs.Rd tests/scratch/flmdef-wtf.R tests/testthat.R tests/testthat/helper-FacileAnalyisResult-validity.R tests/testthat/test-biocbox.R tests/testthat/test-facile_api_extensions.R tests/testthat/test-fdge.R tests/testthat/test-fdge_model_def.R tests/testthat/test-ffsea.R tests/testthat/test-flm_def.R tests/testthat/test-fpca.R tests/testthat/test-interaction-analysis.R tests/testthat/test-serialization.R vignettes-wip/FacileAnalysis.Rmd vignettes-wip/FacileRnaSeqGene.Rmd vignettes-wip/FacileRnaSeqGeneEdgeRQL-tests.Rmd vignettes-wip/FacileRnaSeqGeneEdgeRQL.Rmd vignettes/FacileAnalysis-RNAseq.Rmd vignettes/FacileAnalysis-examples.Rmd vignettes/FacileAnalysis-fdge.Rmd vignettes/FacileAnalysis-fpca.Rmd vignettes/FacileAnalysis-fsea.Rmd