compare.FacileFseaTtestAnalysisResult: Compare two (or more) ffsea results.

In facilebio/FacileIncubator: Incubator for half-baked ideas

Compare two (or more) ffsea results.

Description

This only works with ffsesa results generated from a ttest dge analysis

Usage

compare.FacileFseaTtestAnalysisResult(
  x,
  y,
  ...,
  method = NULL,
  score = c("logFC", "t", "NES"),
  features = NULL
)

Arguments

...	you can provide more FacileFseaTtestAnalysisResult objects
features	The features used to calucate the effect size of the gsea result. This can be either "all", or "leading_edge" to have this method pull the genes, or a long data.frame with collection,name,feature_id to pull these out manually using some externally specified approach.
genesets	The genesets to show. If NULL (default), takes the ntop genesets by pvalue. Users can provide a collection,name,group tibble that pulls out specific genesets, and optionally groups them by user-defined categories.

facilebio/FacileIncubator documentation built on Oct. 26, 2023, 9:58 p.m.