We use rrvgo, goSemSim and friends
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x |
A FacileFseaAnalysisResult |
ontology |
which ontology are were summarizing? BP, MF, or CC |
direction |
focus on all genes, or only up or down regulated genes (works for ttest, not ANOVA) |
similarity |
The method to use to measure similarity, see here. |
min_logFC, max_padj |
parameters used to define signficant genes. If the TREAT framework was used, defaults to the threshold tested, otherwise its zero. |
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