Description Usage Arguments Details Value
The logFC and t-statistics of the genes from the leading edge
(defined in extract_leading_edge()
) are used to give an effect size of the
geneset shift.
1 2 3 4 5 6 7 | leading_edge_scores(
x,
leading_edge = NULL,
aggregate = c("t", "logFC"),
stats = NULL,
...
)
|
x |
The FacileFseaAnalysisResult objects where |
leading_edge |
Precaculated leading edge genes, as in the output from
|
aggregate |
the column names from the dge results to summarize, defaults
to |
stats |
A name of a gsea method run in |
This is used in place of the ES/NES mojo.
a tibble of geneset scores, aggregated by leading edge genesets
for columns in aggregate
. If "fgsea"
is a method run in "x"
, ES
,
and NES
columns will be returned as well.
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