run_analyses: Executes the predefined analysis defined in an experiment...

In facilebio/FacileIncubator: Incubator for half-baked ideas

Executes the predefined analysis defined in an experiment setup table

Description

Executes the predefined analysis defined in an experiment setup table

Usage

run_analyses(
  definitions,
  board = pins::board_temp(),
  key = NULL,
  gdb = NULL,
  ffsea_methods = NULL,
  semdata = NULL,
  BPPARAM = BiocParallel::bpparam(),
  ...
)

Arguments

definitions	path to the comparison definition file
board	the pinboard to serialize the results to

Examples

efds <- FacileData::exampleFacileDataSet()
esamples <- FacileData::with_sample_covariates(FacileData::samples(efds))
adefs <- read.csv(
  system.file("extdata", "example-auto-analysis.csv",
              package = "FacileIncubator"))
results <- run_analyses(adefs, samples = esamples)

facilebio/FacileIncubator documentation built on April 17, 2025, 10:58 a.m.