leading_edge: Extracts the leading_edge genes from one or more results.

In facilebio/FacileIncubator: Incubator for half-baked ideas

Extracts the leading_edge genes from one or more results.

Description

Only works with FacileFseaTtestAnalysisResult that ran methods = "fgsea". If more than one is passed in, the union of genes in the leading edge will be returned. (or intersection, defined by the combine_by parameter)

Usage

leading_edge(..., .combine_by = c("union", "intersect"))

Arguments

...	A single (or list of) FacileTtestAnalysisResult objects that have been run with "fgsea" that we will extract the leading edge genes from per geneset.
.combine_by	When multiple FacileTtestAnalysisResult objects are provided in ..., are the leadeing edge genes the "union" of the genes from each geneset across results, or the "intersect"-ion?

Details

FacileFseaTtestAnalysisResult must be passed in as named arguments if there is more than one.

facilebio/FacileIncubator documentation built on Oct. 26, 2023, 9:58 p.m.