get_nreads: Get number of aligned reads from a bam file
In fbreitwieser/pavian: Visualize and analyze metagenomics classification results
View source: R/alignment-get_pileup.R
get_nreads R Documentation
Get number of aligned reads from a bam file
Description
Get number of aligned reads from a bam file
Usage
get_nreads(bam_file, min_mapq = 0)
Arguments
bam_file
character(1) or BamFile; BAM file path.
min_mapq
Minimum mapping quality
Value
Number of reads for each sequence.
fbreitwieser/pavian documentation built on Jan. 5, 2024, 1:43 a.m.
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View source: R/alignment-get_pileup.R
| get_nreads | R Documentation |
Get number of aligned reads from a bam file
Description
Get number of aligned reads from a bam file
Usage
get_nreads(bam_file, min_mapq = 0)
Arguments
bam_file |
character(1) or BamFile; BAM file path. |
min_mapq |
Minimum mapping quality |
Value
Number of reads for each sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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