read_report: Read Kraken-style and MetaPhlAn reports
In fbreitwieser/pavian: Visualize and analyze metagenomics classification results
View source: R/datainput-read_report.R
read_report R Documentation
Read Kraken-style and MetaPhlAn reports
Description
Read Kraken-style and MetaPhlAn reports
Usage
read_report(myfile, has_header = NULL, check_file = FALSE)
Arguments
myfile
Kraken-style or MetaPhlAn report file.
has_header
If the kraken report has a header or not.
check_file
If TRUE, only the first 5 lines of the file are loaded.
Value
report data.frame
fbreitwieser/pavian documentation built on Jan. 5, 2024, 1:43 a.m.
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View source: R/datainput-read_report.R
| read_report | R Documentation |
Read Kraken-style and MetaPhlAn reports
Description
Read Kraken-style and MetaPhlAn reports
Usage
read_report(myfile, has_header = NULL, check_file = FALSE)
Arguments
myfile |
Kraken-style or MetaPhlAn report file. |
has_header |
If the kraken report has a header or not. |
check_file |
If TRUE, only the first 5 lines of the file are loaded. |
Value
report data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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