README.md
In fcampelo/epitopes: Processing and Feature Extraction for Epitope Data

epitopes package

Processing, Feature Extraction and modelling of epitope data from the Immune Epitope Database (IEDB)

Consolidation of linear B-cell epitopes from the full IEDB database and retrieval of protein data from NBCI and Uniprot.
Organism- and taxon-based filtering of epitope data.
Data splitting for machine learning based on protein dissimilarity.
Extraction of observations for feature calculation using a sliding window representation.
Calculation of sequence-based features.
Read prediction output from other predictors (ABCPred, Bepipred 2.0, iBCE-EL, LBtope, SVMTrip)
Fitting classification models to data with hold-out set-based assessment.