smooth_predictions: Smoothing of prediction vectors
In fcampelo/epitopes: Processing and Feature Extraction for Epitope Data

smooth_predictions

R Documentation

Smoothing of prediction vectors

This function runs a sliding window smoother on prediction vectors.

smooth_predictions(x, window_size = 15, type = "mode", minsize = 8)

`x`	vector of predictions (must be numeric)
`window_size`	size of the sliding window. Only used if `type` is either `"mean"` or `"mode"`.
`type`	type of smoothing function to use. Accepts "mode" (simple majority vote), "mean" or "minsize".
`minsize`	smallest sequence length for positive predictions. Stretches of positive-labelled positions shorter than `minsize` are flipped to negative (only works if `⁠type == "minsize⁠`).