get_taxonomy: Retrieve taxonomic classification tables from NCBI.
In fcampelo/epitopes: Processing and Feature Extraction for Epitope Data
get_taxonomy R Documentation
Retrieve taxonomic classification tables from NCBI.
Description
This function retrieves the taxonomic information of a vector of organism
IDs, from the NCBI Taxonomy data base.
Usage
get_taxonomy(uids, save_folder = NULL)
Arguments
uids
vector of organism IDs to retrieve taxonomical information, or a
data.table object of class LBCE_dt, generated by get_LBCE().
save_folder
path to folder for saving the results.
Value
A list containing the information for each element of uids
Author(s)
Felipe Campelo (f.campelo@aston.ac.uk)
Examples
uids <- c("6282", # O. volvulus,
"9606") # H. sapiens
tax <- get_taxonomy(uids)
fcampelo/epitopes documentation built on April 22, 2023, 12:23 a.m.
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| get_taxonomy | R Documentation |
Retrieve taxonomic classification tables from NCBI.
Description
This function retrieves the taxonomic information of a vector of organism IDs, from the NCBI Taxonomy data base.
Usage
get_taxonomy(uids, save_folder = NULL)
Arguments
uids |
vector of organism IDs to retrieve taxonomical information, or a
data.table object of class LBCE_dt, generated by |
save_folder |
path to folder for saving the results. |
Value
A list containing the information for each element of uids
Author(s)
Felipe Campelo (f.campelo@aston.ac.uk)
Examples
uids <- c("6282", # O. volvulus,
"9606") # H. sapiens
tax <- get_taxonomy(uids)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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