read_abcpred: Read saved output from ABCPred
In fcampelo/epitopes: Processing and Feature Extraction for Epitope Data

read_abcpred

R Documentation

Read saved output from ABCPred

This function is used to read the saved HTML output from ABCPred.

read_abcpred(res.file, protID, proteins, threshold = NULL, ...)

`res.file`	path to the results file. Must be an HTML file containing the ABCPred output.
`protID`	ID of the protein represented in `res.file`
`proteins`	data frame containing protein data related to the predictions in `res.file`. Each position in a protein must be represented by a row in this data frame. Must have at least the columns Info_UID (with protein IDs) and Info_center_pos (with position on the protein).
`threshold`	probability threshold for setting the class of a peptide as positive. If `NULL` the routine employs the threshold value used in the ABCPred call that generated the data in `res_file`.
`...`	Currently unused.