Files in fchuffar/epimedtools

Useful Tools Allowing Multi-Omics Analysis

R/Study.R R/epimedtools.R R/exprin.R R/hm.R R/utils.R README.md man/FDR.Rd man/Study_abstract-class.Rd man/broken_stick.Rd man/check_study.Rd man/compute_survival_table.Rd man/coxres.Rd man/create_study.Rd man/discr.Rd man/download_gse_raw_tar.Rd man/epimedtools.Rd man/et_pairs.Rd man/fuse_exp_grp.Rd man/gdc_client_wrapper.Rd man/get_cel_filenames.Rd man/get_exprin_app.Rd man/get_fake_study.Rd man/get_gsm.Rd man/get_hm_app.Rd man/get_nbline.Rd man/get_tcga_exp_grp.Rd man/intersect_rec.Rd man/longest_common_prefix.Rd man/m2sd.Rd man/mgetGEO.Rd man/monitored_apply.Rd man/monitored_sapply.Rd man/mread.csv2.Rd man/mreadRDS.Rd man/mtgetGEO.Rd man/overview.Rd man/perform_anova.Rd man/perform_anova_gen.Rd man/plot_bean_expr.Rd man/plot_hm.Rd man/plot_hm2.Rd man/plot_survival_panel.Rd man/plot_survival_panel_simple.Rd man/plot_survival_panel_simple2.Rd man/plot_volcano.Rd man/qc_expr.Rd man/revcomp.Rd man/scurve.Rd man/simplify_column_names.Rd man/simplify_exp_grp.Rd man/simplify_factor_names.Rd man/simplify_sample_names.Rd man/summarize_exp_grp.Rd man/tcga_explore_data.Rd man/tcga_fum_data.Rd man/tcga_merge_metadata_cart_and_clinicals.Rd tests/testthat.R tests/testthat/test-Study_features.r tests/testthat/test-Study_geo.r tests/testthat/test-Study_loc.r tests/testthat/test-Study_raw_trscr.r tests/testthat/test-caching_study.r tests/testthat/test-utils.r vignettes/CEL_gz_raw_trscr.Rmd vignettes/GSE26471_gse.Rmd vignettes/GSE26471_local.Rmd vignettes/GSE26471_mtrx.Rmd vignettes/Mann-Whitney_trscr_analysis.Rmd vignettes/trscr_analysis.Rmd