shake_davidResult: Convert the output of DAVID

View source: R/gs_shaker.R

shake_davidResultR Documentation

Convert the output of DAVID

Description

Convert the output of DAVID for straightforward use in GeneTonic()

Usage

shake_davidResult(david_output_file)

Arguments

david_output_file

The location of the text file output, as exported from DAVID

Value

A data.frame compatible for use in GeneTonic() as res_enrich

See Also

Other shakers: shake_enrichResult(), shake_enrichrResult(), shake_fgseaResult(), shake_gprofilerResult(), shake_gsenrichResult(), shake_topGOtableResult()

Examples

david_output_file <- system.file("extdata",
  "david_output_chart_BPonly_ifng_vs_naive.txt",
  package = "GeneTonic"
)
res_enrich <- shake_davidResult(david_output_file)

federicomarini/GeneTonic documentation built on Oct. 10, 2024, 8:49 p.m.