shake_davidResult: Convert the output of DAVID

In federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Convert the output of DAVID

Description

Convert the output of DAVID for straightforward use in GeneTonic()

Usage

shake_davidResult(david_output_file)

Arguments

david_output_file

The location of the text file output, as exported from DAVID

Value

A data.frame compatible for use in GeneTonic() as res_enrich

See Also

Other shakers: shake_enrichResult(), shake_enrichrResult(), shake_fgseaResult(), shake_gprofilerResult(), shake_gsenrichResult(), shake_topGOtableResult()

Examples

david_output_file <- system.file("extdata",
  "david_output_chart_BPonly_ifng_vs_naive.txt",
  package = "GeneTonic"
)
res_enrich <- shake_davidResult(david_output_file)

federicomarini/GeneTonic documentation built on March 27, 2024, 4:19 p.m.