shake_fgseaResult: Convert the output of fgsea

View source: R/gs_shaker.R

shake_fgseaResultR Documentation

Convert the output of fgsea

Description

Convert the output of fgsea for straightforward use in GeneTonic()

Usage

shake_fgseaResult(fgsea_output)

Arguments

fgsea_output

A data.frame with the output of fgsea() in fgsea.

Value

A data.frame compatible for use in GeneTonic() as res_enrich

See Also

Other shakers: shake_davidResult(), shake_enrichResult(), shake_enrichrResult(), shake_gprofilerResult(), shake_gsenrichResult(), shake_topGOtableResult()

Examples

data(fgseaRes, package = "GeneTonic")
res_from_fgsea <- shake_fgseaResult(fgseaRes)

federicomarini/GeneTonic documentation built on Oct. 10, 2024, 8:49 p.m.